Every letter we have printed
Page 67 of 93 of this archive, newest first.
On “Why people actually stop, in the order they actually stop” — The Ledger, 23 Sep 2024
Supply is a reason in this market that has no analogue in the trial literature. A source that becomes unavailable ends an arrangement as effectively as an adverse effect, and no clinical taxonomy has a category for it.
— L. Braithwaite, Wellington
On “Why people actually stop, in the order they actually stop” — The Ledger, 23 Sep 2024
The industry-funded and investigator-initiated withdrawal studies in this area differ systematically in follow-up length. That is a fact about funding rather than about biology, and it should appear in any summary table.
— D. Lockridge, Tulsa, OK
On “Why people actually stop, in the order they actually stop” — The Ledger, 23 Sep 2024
The trial designs answer a question about the drug and the reader has a question about themselves. A mean regain curve tells an individual very little about their own trajectory, and the variance around those means is rarely printed with the same prominence.
— N. Villaseñor, Guadalajara
On “Why people actually stop, in the order they actually stop” — The Ledger, 23 Sep 2024
A note of thanks from a long-standing reader who has never written before. The consistency across thirty issues is the thing worth remarking on, and consistency never gets a letter.
— S. Tovmasyan, Gyumri
On “What “LC-MS: conforms” tells a reader, which is almost nothing” — Laboratory Notebook, 23 Sep 2024
A small format complaint. Reports that state a mass to four decimal places and an error in parts per million, without stating the mass at which the calibration was performed, are precise about the wrong thing. Precision presented without its provenance reads as authority and is not.
— M. Guðmundsdóttir, Reykjavík
On “What “LC-MS: conforms” tells a reader, which is almost nothing” — Laboratory Notebook, 23 Sep 2024
The value I most want on an identity report is the theoretical mass the analyst calculated, printed beside the observed one. Half the reports I receive give only the observed figure, which requires the reader to redo the arithmetic and to guess which charge state and which counter-ion the analyst assumed.
— C. Waterston, Carlisle
Observed and calculated, side by side, with the charge state stated, is the whole of what an identity report has to do. It is remarkable how many manage two of the three.
On “What “LC-MS: conforms” tells a reader, which is almost nothing” — Laboratory Notebook, 23 Sep 2024
You give the glutamine-to-lysine difference as 0.036 daltons and say it needs an orbital trap. In practice you also need the two species to be chromatographically separated or present in a sensible ratio, because at one per cent of the parent intensity the minor peak sits on the shoulder of the isotope envelope regardless of resolving power.
— H. Steinmetz, Basel
Yes, and this is the more useful statement of the problem. Resolving power is necessary and not sufficient; dynamic range and separation matter as much. We have added a sentence to the table note.
On “What “LC-MS: conforms” tells a reader, which is almost nothing” — Laboratory Notebook, 23 Sep 2024
You write that leucine and isoleucine cannot be distinguished by tandem mass spectrometry. That is too absolute. Side-chain fragmentation under high-energy conditions produces diagnostic w and d ions, and the discrimination has been demonstrated repeatedly.
— K. Toivonen, Jyväskylä
Correct, and the text has been amended. The discrimination is achievable under specialised conditions and is not available in any routine service this market uses, which is what we should have written rather than the stronger claim.
On “What “LC-MS: conforms” tells a reader, which is almost nothing” — Laboratory Notebook, 23 Sep 2024
A short note of thanks. I sent this article to two people who needed it and neither has argued with me since.
— K. Ndlovu, Bloemfontein
On “How far back does this document actually reach?” — The Supply Chain, 22 Sep 2024
A certificate for a molecule is not a certificate for a vial. Where a supplier publishes one document per product rather than one per lot, the document is marketing with a chromatogram attached, however genuine the underlying determination was.
— P. Nyland, Bodø
On “How far back does this document actually reach?” — The Supply Chain, 22 Sep 2024
Sample quantity is a provenance question in disguise. A determination performed on the whole vial and one performed on a few milligrams taken from the top of a settled cake are not equivalent, and neither the amount nor the sampling method appears on any certificate I have collected.
— C. Rijkaard, Groningen
On “Why a 0.036-dalton difference is the hardest number in peptide identity” — Analytics, 22 Sep 2024
We learned this the expensive way. A co-eluting truncation two residues short sat under our main peak for months, invisible on a unit-resolution instrument and obvious the first time the sample went onto a better one. Nobody had done anything wrong; the tool simply could not see it.
— W. Stroud, Chattanooga, TN
That is the failure this section exists to describe, and the ending is the important part: no misconduct, no dishonesty, an instrument answering the question it was capable of answering.
On “Why a 0.036-dalton difference is the hardest number in peptide identity” — Analytics, 22 Sep 2024
Isotope envelopes are where resolution becomes visible to a non-specialist. At low resolving power a peptide is a hump; at high resolving power it is a comb whose spacing tells you the charge state directly. If the report shows a hump, the instrument has not answered the question you paid it to answer.
— H. Nakagawa, Fukuoka
On “The advice is mostly reasonable. The certainty is not earned.” — Patient Notes, 22 Sep 2024
A modest suggestion for the reference desk: a table of every composition substudy with its sample size, method, duration and population beside the headline ratio. It would settle a great many arguments by making the basis of each number visible at once.
— M. Bogdanović, Podgorica
That table is now in preparation and your description of it is close to the specification we had drafted. The sample sizes alone are instructive when set side by side.
On “The advice is mostly reasonable. The certainty is not earned.” — Patient Notes, 22 Sep 2024
Age and baseline muscularity change the answer more than most sources admit. A finding averaged across a trial population is not a prediction about a person at either end of that distribution, and popular summaries convert averages into individual expectations almost automatically.
— A. Lindholm, Gothenburg
That conversion is the commonest failure in the translation of this literature, and it happens silently.
On “The advice is mostly reasonable. The certainty is not earned.” — Patient Notes, 22 Sep 2024
Comparing substudies across trials requires the scanner model and software version, because absolute values differ between them. Almost nobody who compares them checks, and the manufacturers are quite clear that they should.
— M. Quintero, San Juan
On “The advice is mostly reasonable. The certainty is not earned.” — Patient Notes, 22 Sep 2024
I have read your protein tables twice and I still cannot work out what I should eat. I appreciate that this is the honest position but it is not a useful one for a person in a supermarket.
— K. Rautio, Tampere
It is a fair complaint about a real limitation. What we can say is that the defensible range is narrower than the disagreement suggests, that the denominator matters more than the ratio, and that a clinician or dietitian can convert a range into a number for your body in a way that a magazine cannot.
On “Stepping down against stopping: two decisions treated as one” — Clinical Trials, 21 Sep 2024
Tapering is described in the community literature with a confidence the published evidence does not support. There is no trial that compares a taper against an abrupt stop in this class, and the absence should be stated wherever the practice is discussed.
— A. Wiśniewski, Szczecin
It should, and we try to. A practice can be widespread, plausible and entirely unstudied at the same time, and readers are owed all three facts together.
On “Stepping down against stopping: two decisions treated as one” — Clinical Trials, 21 Sep 2024
Where a reason is recorded by a clinician rather than by the person, the categories reflect what the clinician was listening for. That is not a criticism of clinicians; it is a property of any coded record, and it is rarely acknowledged in the resulting statistics.
— J. Verstraete, Bruges
On “Stepping down against stopping: two decisions treated as one” — Clinical Trials, 21 Sep 2024
The clinical trials that inform this discussion ran for a fixed period and stopped. Every statement about maintenance beyond that horizon is extrapolation, and the confidence with which extrapolations are stated in general discussion is not warranted by their source.
— A. Cortesi, Ancona
On “Stepping down against stopping: two decisions treated as one” — Clinical Trials, 21 Sep 2024
Reasons are ranked in most reporting and the ranking is a function of the category list. Change the list and the ranking changes, which means the headline finding of most of these surveys is a property of their questionnaire.
— E. Sandoval-Reyes, Monterrey
Instrument-dependent findings are common in survey work and rarely flagged. Publishing the questionnaire alongside the result would let readers judge for themselves.
On “Stepping down against stopping: two decisions treated as one” — Clinical Trials, 21 Sep 2024
The word maintenance carries an assumption that the maintained state is stable. Everything in the published record suggests it is a position held against a gradient, and the vocabulary of maintenance makes the effort involved invisible to people planning around it.
— K. Sivertsen, Bergen
That is the criticism of the term this department has been circling. A word that implies rest where the data implies work will mislead a reader planning years ahead.
On “What STEP 4 and SURMOUNT-4 actually established” — Pharmacology, 20 Sep 2024
Adherence typically falls over the course of a long trial, and a falling adherence curve will produce a flattening outcome curve without any change in response. The two are rarely plotted together.
— T. Salmi, Oulu
On “What STEP 4 and SURMOUNT-4 actually established” — Pharmacology, 20 Sep 2024
Escalating in response to a plateau is discussed as though the relationship between exposure and effect were linear beyond the studied range. It is not, in any published dose-response data I have seen, and the curve flattens there too.
— L. Nyoni, Harare
On “What STEP 4 and SURMOUNT-4 actually established” — Pharmacology, 20 Sep 2024
The point I would press is documentation. Whatever schedule is followed, writing down the dose, the date and what happened turns an anecdote into a small dataset. Most of the confusion I hear about comes from people who cannot reconstruct what they did.
— A. Mbeki, Lusaka
On “What STEP 4 and SURMOUNT-4 actually established” — Pharmacology, 20 Sep 2024
Where a trial permitted a delay in escalation, the proportion who used it is reported in some papers and is an interesting number in its own right. It is closer to real practice than the nominal schedule.
— M. Bogdanović, Podgorica
On “Do you need the top of the ladder?” — Pharmacology, 20 Sep 2024
Duration of the published trials is short relative to the question. Whether a plateau at month twelve is stable at month thirty-six is a question no study in this class has answered, and it is answered confidently in general discussion.
— R. Duffy-Behan, Athlone
Where the evidence stops is a fact readers are entitled to, and we try to print the horizon of the underlying study beside any curve we describe.
On “Do you need the top of the ladder?” — Pharmacology, 20 Sep 2024
Maintenance after a plateau is where the evidence is thinnest and where most people spend most of their time. That imbalance between what is studied and what is lived is the strongest argument for the withdrawal literature you covered separately.
— T. Björnsson, Akureyri
On “Do you need the top of the ladder?” — Pharmacology, 20 Sep 2024
Dose-response data in this class flattens well before the top of the studied range on most endpoints, which is the actual argument against escalation. It is a stronger argument than the one usually made and it comes from published curves.
— M. Ó Riain, Tralee
On “Do you need the top of the ladder?” — Pharmacology, 20 Sep 2024
Trial protocols specify what to do after a missed administration, and those instructions are the closest thing to evidence-based guidance available. They are freely readable in the supplementary materials and almost never quoted.
— L. Oyarzún, Concepción
On “Do you need the top of the ladder?” — Pharmacology, 20 Sep 2024
A step from one dose to the next is a proportional change and the proportion shrinks as the doses rise. Doubling early in a schedule is a much larger relative change than the same absolute increment later, and tolerability tracks the proportion rather than the milligrams.
— C. Pettersson, Örebro
On “What the trials monitored, and what that implies about routine practice” — Laboratory Notebook, 19 Sep 2024
Panels sold direct to consumers are assembled for marketing as much as for clinical use, which is why they are long. A shorter panel repeated on a schedule is more informative than a long one taken once.
— T. Wexford, Louisville, KY
Fewer analytes measured more often is better information than many measured once, and it is the opposite of how these products are sold.
On “What the trials monitored, and what that implies about routine practice” — Laboratory Notebook, 19 Sep 2024
Deciding in advance what would change a decision is the discipline missing from most self-arranged testing. A test that cannot change anything is a purchase rather than a measurement.
— J. Mbatha, Durban
On “Where the receptor is: a tissue-by-tissue account of tirzepatide’s reach” — Explainers, 19 Sep 2024
Receptor distribution maps come largely from tissue studies with antibodies of variable specificity, and several widely reproduced maps rest on reagents that were later questioned. The provenance of a distribution map matters as much as its content.
— L. Nyoni, Harare
Antibody validation is a real and unglamorous problem in this literature, and it sits underneath a good deal of the mechanistic story.
On “Where the receptor is: a tissue-by-tissue account of tirzepatide’s reach” — Explainers, 19 Sep 2024
Receptor expression in cardiac tissue is limited and much of the cardiovascular effect is likely indirect. I would rather see that stated as the current reading of the evidence than see the outcome data described as though the mechanism were established.
— G. Thorbjørnsen, Tromsø
Agreed, and the piece now separates the outcome finding from the mechanistic account of it, which are on quite different evidential footings.
On “Freezing a reconstituted vial: the ice-water interface problem” — Analytics, 17 Sep 2024
Concentration matters for solution stability and it is chosen by the person reconstituting rather than by anybody who has studied it. A dilute preparation and a concentrated one are two different experiments, and both are described by the same anecdote.
— F. Legrand, Rennes
On “Freezing a reconstituted vial: the ice-water interface problem” — Analytics, 17 Sep 2024
In-use stability is a property of a preparation and everything published is about a powder. The moment a vial is reconstituted it becomes a different material with a different shelf life, and the certificate that came with it has nothing to say about that.
— N. Villaseñor, Guadalajara
The certificate describes the lyophilised material as tested. Everything after reconstitution is outside its scope, and the document does not say so because nobody expects it to be read that way.
On “Freezing a reconstituted vial: the ice-water interface problem” — Analytics, 17 Sep 2024
Phase-change packs are worth the modest extra cost over water ice and almost nobody asks for them. They hold a narrower band for longer and they do not produce the initial sub-zero shock that a freshly frozen gel pack in direct contact with a vial can.
— N. Ó Broin, Sligo
Several suppliers switched to phase-change material after readers asked, which is the most direct piece of consequence this department has been able to trace.
On “What the nitrogen said” — Analytics, 17 Sep 2024
I have been buying research peptides for six years and I did not know that the label mass referred to fill mass rather than peptide mass. I have recalculated three years of notes this week. Thank you, I think.
— T. Elorriaga, San Sebastián
You are not unusual in that, which is the reason we ran the piece.
On “What the nitrogen said” — Analytics, 17 Sep 2024
Your table gives vial H at 81% content with 98.9% stated purity. Those two numbers together imply nearly a fifth of the vial is something other than peptide and yet almost none of it shows up chromatographically. Can you explain the mechanism rather than just reporting it?
— M. Delgado-Rios, Córdoba
Water, counter-ion and residual solvent — none of which absorb usefully at 214 nm and none of which are integrated as peaks. Chromatographic purity is calculated on the peptide-derived signal only, so a vial can be simultaneously very pure and largely not peptide. It is the single most consequential thing the two numbers together tell you, and we should have spelled it out in the article rather than in a reply.